species:   Rhsol
pid:       PID0483
parent:    Rhi-milR-118
paralog:   
locus:     KB317811.1:16418-16530
matures:   ['UCAGGAAGCAUGGAUUGGGG', 'CCAGAUUGUUUCCCAGGAC']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317811.1:16418-16530

2 out of bounds
25 alignments
25 proper strand
21 stranded perfect matches

                  ***********************                                                  **********************
GCAGUGUUUGCAAAGAUUGGUUCAGGAAGCAUGGAUUGGGGGGCCAGUGGGAUGUCCACAUGGUCAGCACAUUGUGACAGGGUGUCUGGUUCACCAGAUUGUUUCCCAGGACA
(((.....)))........((((.(((((((....((((.(((((((.....((((.(((..((....))..)))))))......))))))).))))..)))))))..)))).
---------------------UCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=20 a=0 c
---------------------------------------------------------------------------------------------CCAGAUUGUUUCCCAGGAC- l=19 a=0 c*
--------------------UUCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=21 a=9 ma
---------------------------------------------------------------------------------------------CCAGAUUGUUUCCCAGGACA l=20 a=0 ma*

--AGUGUUUGCAAAGAUUGGUUCAGG--------------------------------------------------------------------------------------- l=24 a=1 
----UGUUUGCAAAGAUUGGUUCAGGu-------------------------------------------------------------------------------------- l=23 a=1 
----------CAAAGAUUGGUUCAGGAAGCAUG-------------------------------------------------------------------------------- l=23 a=1 
-----------AAAGAUUGGUUCAGGAAGCAUG-------------------------------------------------------------------------------- l=22 a=1 
-----------AAAGAUUGGgUCAGGAAGCAUGGA------------------------------------------------------------------------------ l=24 a=1 
-----------AAAGAUUGGUUCAGGAAGCAUGGA------------------------------------------------------------------------------ l=24 a=1 
-----------------UGGUUCAGGAAGCAUGGAUUGGG------------------------------------------------------------------------- l=23 a=2 
-----------------UGGUUCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=24 a=1 
--------------------UUCAGGAAGCAUaGAUUGGG------------------------------------------------------------------------- l=20 a=1 
--------------------UUCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=21 a=9 (ma)
--------------------UUCAGGAAGCAUGGAUUGGGGGG---------------------------------------------------------------------- l=23 a=1 
--------------------UUCAGGAAGCAUGGAUUGGGGGGa--------------------------------------------------------------------- l=24 a=1 
---------------------UCAGGAAGCAUGGAUUGGGGGG---------------------------------------------------------------------- l=22 a=1 
-----------------------AGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=18 a=2 
--------------------------------------------------------------------------------------UGGUUCACCAGAUUGUUUCCCAGG--- l=24 a=1 

mb-01111
ax-1001011
ku-01
ss-111111101100
fn-111
